NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209135_1030133

Scaffold Ga0209135_1030133


Overview

Basic Information
Taxon OID3300027642 Open in IMG/M
Scaffold IDGa0209135_1030133 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1939
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014503Metagenome / Metatranscriptome262Y
F019830Metagenome227Y
F028512Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209135_10301335F014503AGGAVKASVHYWKFEDGKTPPNAGHPIKELILDPPPRGWYCWVYPKDDRAFEEWMTRICPTADMCHRFNSGDPMWTVYIKDDVEATMFRLMWM
Ga0209135_10301337F019830AGGAMSKRIGPITLDGETADRITLLNLKEYRSYLTKELAAWRKNPRTEDNLDGVWLHPEDVTGNTVTINALNLLIKHFGG
Ga0209135_10301338F028512GGAGMNEELKAIAVAAGAPDEVLNTLWFNIFCQKFAHLLVEELEKEGS
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