NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209076_1000525

Scaffold Ga0209076_1000525


Overview

Basic Information
Taxon OID3300027643 Open in IMG/M
Scaffold IDGa0209076_1000525 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6650
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F019978Metagenome226N
F055614Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209076_10005252F055614N/AVNSEDDASFEDGFSDQARKKALEMFEHQPVPAAEEFDFGELFARILWEKDWTDKLESVVVKIRNRFRIRDTDTKLSKELKALIPDMREVAKAYDEMTTGYKEFIQTILDAKQSPSSQTRKKIESGKNAKLSNHPARHK
Ga0209076_10005253F019978GGAGGMSEKKRVPPWERAQLSFTLSERRRLRKVEESERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSVQLAKEEQKIGEEQGFCKCARNNPKT
Ga0209076_10005254F013998GAGMPLKMHRLLSLLAFVLALIGGVLVVVSALGGLGRPSIVSLAISSLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLTGAAGTSVLLVLAAGVLGLVAAELKPWWAFWR
Ga0209076_10005255F014491N/ALILASLAMFGTIAYTITLQDITNYAITYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTPSTPLLRYQFLTGVGLFTILVVFYSTSTIEATRQRLLAAQAAKASEMGKTAG
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