NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209076_1003345

Scaffold Ga0209076_1003345


Overview

Basic Information
Taxon OID3300027643 Open in IMG/M
Scaffold IDGa0209076_1003345 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3617
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037663Metagenome / Metatranscriptome167N
F046280Metagenome151N
F091738Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209076_10033452F046280GAGGMTKYGDFWIKMPKRFQTALRRCRTDQFLARSGGIADEFHKSVREYDGSSDDQFREAYVRATETMAPRLLVPFASMKPTDTAYRDHVEFFQRHLGCLKEFGLSDGEIVDAVAAQVCVVLQGRGAAP
Ga0209076_10033453F091738AGGAMDTAPTTPRKVQLIKKRGQPLRKIGFRILGLGAVASLGIDLVTWLLTREGNLVRIALGFVLLGGAVAVIGTGLLIDQYDKRKLGI
Ga0209076_10033454F037663GGAGMPRLAALAGQIIEARKPGDILELRAFRPEDIVSDRLVERALRTSADYVASYVIAVAKADPERARLLAEGIEVPWVRPLERSNGHSKSVVEVVRLSEYLTNHALVIGETAGRAGVRRLVKKKR
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