NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209076_1015687

Scaffold Ga0209076_1015687


Overview

Basic Information
Taxon OID3300027643 Open in IMG/M
Scaffold IDGa0209076_1015687 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2008
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013073Metagenome / Metatranscriptome274N
F017464Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0209076_10156872F013073GGAGMAEDGSDSEAEQGQQQDPPDDARIEPFLDMRDPTFRRILRSATSKFNQMICPLMASVCVRDLCMFWNEHSKSCYIVDTLKMNIYHTVCPKCGSTNIELSAREQRSGKAKLYRCDTCGNEWGAVH
Ga0209076_10156873F017464AGGAGMTDMLKGSQVLQKTYTYIESVTKESRKALMEEFSQKHKGIAIKSASDTLRQSVLEWFPRRDPMLKLVLEKTSQGKPGDVRMDFLGETKSVHFKVHLHAVFAVNGQSPDSPAFLKEVTLLVDPREFSM
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