NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209356_1000934

Scaffold Ga0209356_1000934


Overview

Basic Information
Taxon OID3300027644 Open in IMG/M
Scaffold IDGa0209356_1000934 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11621
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039527Metagenome / Metatranscriptome163N
F056556Metagenome137N
F083891Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209356_10009341F083891AGGAMGDTKLERMERMEARMSQSIECPSCRCAVPVALFTSRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELPMVGFSAQN
Ga0209356_100093421F056556AGGAGGMKKQIVTVSCQLPEWFEKHSLPRIKDASTRWGADLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPHGHFYACADAPHGDQLHWGRANEMILSQALLGSARWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSIRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP
Ga0209356_10009345F039527N/AVENVLEETMNYYDDKEEGALTFEQIVPGKYYRYNRDYGICEIMESASNKPKILRYLNRDGGLLGGNGDLFEVDMTDRLLAVLKDRRDKTIAFIDEMGTW
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