NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209117_1000002

Scaffold Ga0209117_1000002


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)346135
Total Scaffold Genes303 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)241 (79.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001069Metagenome / Metatranscriptome787Y
F006644Metagenome / Metatranscriptome368Y
F047504Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_1000002183F047504AGGAGGMARQHTTSQSLISIVGAAVVGLGLVILVAKLDGPAAQLMSNLLCAATRTALELLLSAVPAAWQALQAYAFDHQWFSPCPIQTLISFWPLLHVMAGVA
Ga0209117_1000002241F006644N/AMGLMSPAKQSATDAAVELAGRLTEALQRERIVPRFVDSYVVEHGRHGLQVHAALYRDLLALLQREALIAVSVHAMQIVTTDFQPTARSKPRPMVKKDAAAYRRKYLGALARHQKWSMGDALDFQKDFQIYEELIARSASGRRRKPFEAANHPFVDRCAFLLDSSFLEKARVAASRALTSLEELTEQVVSTLM
Ga0209117_1000002255F001069GAGGMQFLPGFTVQCINPQCEARGHWLRADATRAFSEEGRCPCCGDSLRNVPPPLGPRFRMRPRPLTARPPLRPRPR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.