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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027645 Open in IMG/M |
| Scaffold ID | Ga0209117_1000078 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 70520 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 63 (92.65%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003165 | Metagenome / Metatranscriptome | 504 | Y |
| F004246 | Metagenome / Metatranscriptome | 447 | Y |
| F011101 | Metagenome / Metatranscriptome | 295 | Y |
| F025539 | Metagenome / Metatranscriptome | 201 | Y |
| F085999 | Metagenome / Metatranscriptome | 111 | Y |
| F095814 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209117_100007810 | F085999 | AGGA | MKTILKIRTVTCVVLAVGALLSTPGAVASDSDSYPSYLQAKVIAHLPLSGGARQMFLQQEGRRQFLYVQQPSQQGVTVIDITKPERPKVVNQVPLENLTTVSFGLAISETPENSATVGASLAAGNVEGPSGSGVLESVRVLDVSDPAHPRTVRNFDGVTSILQDSARNLLYVANGDGVWIVSHQQVLRSRECSSSDAISPLPNCD |
| Ga0209117_100007811 | F011101 | GGA | MKYRAITFASAAFFVTSLALASDTWILDSSRSKARLFQGSRANSESVNTGVARVTGKVKLDANDLDASVLDLSIYPADEEWEHALSPDGALPTGYVPDATDQTLLTFKSMRILRTGNGQLQVIGDLTLTRVERTVTARPTEDYAGPVYGDPVIHNETHEITFLFPSVSAAHLSGPLTPAMQQKRGVLEIVGSACIDHDEFPELLSAVKETNWPPVVRNKDCHMPSTVGEDYSGAVCTGTLIAATRDDNYQMPASVGEDYSGPQCTPATGNQTTIVLDLKFLHKVPEASVEAHSGKESSWNAAPVRLIGRSN |
| Ga0209117_100007812 | F095814 | GGAGG | MLESTVELLGGLLLSALILLVGACILGSIFAALRAVRRESDDEREEVKEIFAFGAEVTVLDDRMIKTGLIVMTSPENHYGL |
| Ga0209117_100007818 | F004246 | GGAGG | MLDDWDERDEVVAAGSICPVPDCGALVICCRPPDRTGRDNTKSWCEFTCPRCGTYFTVPEDELIFQSVPKEWLLARVQAA |
| Ga0209117_100007820 | F003165 | AGGAG | MAQVIEFYIPNNFRKPLKWAAQLQRGKVIEFCSQIKKSA |
| Ga0209117_10000786 | F025539 | AGGAGG | VSSNVHTALSRNDWTLDLVYDLPSQSLQGDPSIDDPVDDTGLGPRCGDLQVSGEFAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |