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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027645 Open in IMG/M |
| Scaffold ID | Ga0209117_1000192 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35999 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (51.35%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000482 | Metagenome / Metatranscriptome | 1089 | Y |
| F000633 | Metagenome / Metatranscriptome | 971 | Y |
| F001412 | Metagenome / Metatranscriptome | 701 | Y |
| F027602 | Metagenome / Metatranscriptome | 194 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209117_100019212 | F027602 | N/A | VAQFVGVWETGIMAKRSLRILKRVSNIPSRGICESCNTQFSADPRQLGQAGVQQQFNAHKCDTGQNAAPIAKEAAKVSGK |
| Ga0209117_10001922 | F000633 | GGA | MFFVNFIAEEGRWYCFTPTATGVQRIPVSMDATPFEAFTVSMDEQEKEVVN |
| Ga0209117_100019230 | F001412 | AGGAG | MKLNNVAKTVVLGLAVLLASSAFASNKGSLQVGEPFEVSGQQLAPGEYQLRWDGTGSNVEVSFMQGKKEVAKASAKVVELEKASAYDSAAVDHSNGKATVSEVRFAGKKYALAIGATEKAEMSGSSSK |
| Ga0209117_100019234 | F000482 | N/A | MQFSRAHLAIALGSAGLLVLVFLGYLYWLSNQPPVLSRSSERDPLTQMPISITMNPFRDRTIENTASSFISQMRDGNCRKLLAQWEKDYRKKRADFLCNSEAQHPLISWNLVEWEDAPPLAILHYKGRRYNSPSRDATYKDLFSVTEEKKDSGWTVTKYDAVY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |