NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209117_1000437

Scaffold Ga0209117_1000437


Overview

Basic Information
Taxon OID3300027645 Open in IMG/M
Scaffold IDGa0209117_1000437 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17845
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000540Metagenome / Metatranscriptome1043Y
F008266Metagenome / Metatranscriptome336Y
F022497Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0209117_10004371F022497AGGAGGMSRLRMWQVWMATVVLSTGLAVVPGMAAGNTQTFTGKVSDAMCGAKHMEAAIAPADCVRACVQKGAK
Ga0209117_100043710F008266GAGMPKRKKESDSLKGWQQIATFLGQPVSVAQRWAKSGIPVTRESRNVYATPEELNHWLGRESAGEPVRIASESIDLSSELKRGLSFVRKQSRSGSTKKTAA
Ga0209117_10004373F000540GGAMAKKKASNLLPKLTETEQDLLSHIQDGYQLETDSLGGNPVLRRLKDNEEIRPLSANRSTVEAMKQRGLISPGKGRDPLTIVWRLKKKQP
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