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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027645 Open in IMG/M |
| Scaffold ID | Ga0209117_1007749 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3662 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002143 | Metagenome / Metatranscriptome | 590 | Y |
| F035065 | Metagenome / Metatranscriptome | 173 | Y |
| F037102 | Metagenome / Metatranscriptome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209117_10077494 | F037102 | AGGAGG | MNELAPELTQQVLQPAMHQKILLRAAELVAMGWTRGTAARDATGQKVRSTAPQATAWCVVGAVDRALYELLNVDVYDLLGLEVNAYDTAPCPLEVLRVLRRPLERVLGRRDLAHWNDHGCPGPAAAEQLLRAAAATTARS |
| Ga0209117_10077495 | F035065 | GGAGG | MTDREVEAISDFLRHFGSFGCRQICVRRTEPKPRTPEDVGHFVLETLATWRAEGLDAERLYKVATIAIHFDAYKLPGTMCMPACCRPWGTVDPACPPGPGRPLTGAQLQQALLRAVPIGPPPAPDAPLPDDLDEDLKRTGLSPLSP |
| Ga0209117_10077497 | F002143 | GGAGG | VRRCASGAGSGGWWASPKATGRRAVPGSMRRSRPVRHQLLGGQGSPDPLAYCMAPTPDPNEAIQRFLGQWSPMSRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEAYFRHVLGLASWRTAYKRLAIGRILTRFEEPERSLLRSSLAAVGLAKATVVAPAIERFEEWRTWLQCASGLSTVLLQAKVSEAIDALPRGREPAPPGERFRRAVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQATKRPGGASAASHSSVCPRGQTSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |