NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209466_1002910

Scaffold Ga0209466_1002910


Overview

Basic Information
Taxon OID3300027646 Open in IMG/M
Scaffold IDGa0209466_1002910 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3527
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002554Metagenome / Metatranscriptome549Y
F008729Metagenome / Metatranscriptome329Y
F018679Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209466_10029101F002554N/AVARVYIVSFRSIDDRRPSKFIVLADNMKSAINMAWEHGGGDFQSRFGKSTAQAEQMKEGVLRVL
Ga0209466_10029103F018679GGCGGMKSAINMAWEHGGADFQSRFDKSTAQAQEMKEGALRVL
Ga0209466_10029104F008729GAGGMVATIFFLASCSTPPVAFQNASHRQTYSLNVDDLKKLQFYISTDVVAQYQDATGTKSLLLTRLTPGVATDAGPNWIKVSFREGGVDVPFVADPNQYDARYWIATEVEGSKDFKRIYDLSDRFFLYKGIRYKVVSGADAVLFFDLAEWKRLVENRRVTEGRQVGDR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.