Basic Information | |
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Taxon OID | 3300027646 Open in IMG/M |
Scaffold ID | Ga0209466_1002910 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3527 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002554 | Metagenome / Metatranscriptome | 549 | Y |
F008729 | Metagenome / Metatranscriptome | 329 | Y |
F018679 | Metagenome / Metatranscriptome | 233 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209466_10029101 | F002554 | N/A | VARVYIVSFRSIDDRRPSKFIVLADNMKSAINMAWEHGGGDFQSRFGKSTAQAEQMKEGVLRVL |
Ga0209466_10029103 | F018679 | GGCGG | MKSAINMAWEHGGADFQSRFDKSTAQAQEMKEGALRVL |
Ga0209466_10029104 | F008729 | GAGG | MVATIFFLASCSTPPVAFQNASHRQTYSLNVDDLKKLQFYISTDVVAQYQDATGTKSLLLTRLTPGVATDAGPNWIKVSFREGGVDVPFVADPNQYDARYWIATEVEGSKDFKRIYDLSDRFFLYKGIRYKVVSGADAVLFFDLAEWKRLVENRRVTEGRQVGDR |
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