NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209466_1003248

Scaffold Ga0209466_1003248


Overview

Basic Information
Taxon OID3300027646 Open in IMG/M
Scaffold IDGa0209466_1003248 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3361
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031783Metagenome181Y
F037087Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209466_10032482F031783N/AMLLAGCASQQLQSVPPVQQPQSAAPVLSDSPTPTNQMNKNRDRDLSECERESAFAGAGDKGQVFNKCMKARGY
Ga0209466_10032486F037087GAGGVLLRHHPLMVYRGCRNWPPVWSCTDGRNQHPKGEVGTLKAVFRSETQPPSRFFLLISHEGSEYLGCLLFNDEAFCRQVMELLKAHCNRSIAEIGGLDVFHTL

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