NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209466_1006748

Scaffold Ga0209466_1006748


Overview

Basic Information
Taxon OID3300027646 Open in IMG/M
Scaffold IDGa0209466_1006748 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2426
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002124Metagenome / Metatranscriptome591Y
F019697Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0209466_10067482F002124GAGGMADQNEAKTKTIGFLPLEKVQTLKGWEEYLDKSTKLSALRTEAQKAKNSVRDALKERLSENGDMDFAVEGDRIRVFRVFRKQQQGRRTRSLDLSSSFREQWLEQTAEAKGQSDDQGVCDETEDVTPHLNPMTEEAAASLDPVTERLLVLMREKGQR
Ga0209466_10067483F019697N/AMRRELKLLLIEMNVLRVEVEQLRAMEREARNTEEFLSASVTRLMQSRDHWRREAERLQAFLAQVPPWSLFWWSCVDAFKAWRKSADRRLHWA
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