Basic Information | |
---|---|
Taxon OID | 3300027648 Open in IMG/M |
Scaffold ID | Ga0209420_1000080 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 61906 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (76.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000180 | Metagenome / Metatranscriptome | 1730 | Y |
F075148 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209420_100008036 | F075148 | N/A | MFTCPECEQAINQASAACPYCGADVTNAPDGSEFANVGVQNKKITPARMAILLGIFLAILAATAWLALPWKISGTQPDAEAHGLEALGIIEQALTTYQGSEGGFPSSLEGLGDRVRFEAVEAQSAHYTMQYIAGEPDAEGRVKSYTLTARAGNFGYMNFYTDESGIIRGTRENRAAGVQDLPIKQNL |
Ga0209420_100008043 | F000180 | AGGAGG | MIDNGGLISTERLDSDRYTSLQGLETVLNQAIAQAEISESYEKYLEIFDAFYADDIAVTSDTLQESIRGKARVRSLLANFLSPLHIMSEIGGLLVSIRQAAIPGDVAAETHSAWTLELIGVSGNSCKVSWRVLRQWRSSLVSYEYHYDYEQIGGPLTSKDLYFDAASPPAKTRVS |
⦗Top⦘ |