NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209217_1000023

Scaffold Ga0209217_1000023


Overview

Basic Information
Taxon OID3300027651 Open in IMG/M
Scaffold IDGa0209217_1000023 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32022
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (51.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036877Metagenome169Y
F058883Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0209217_100002311F036877N/AVHKKALPLLLIFAVSFSFGGCAYTSANGRREMAYRHYVAKQTKQRRRAMVRAQKAANRQLKLKMKSAVPSEPYITTSVESAAEPWSEPVAPPVTVSASGAIANETDNQPAQP
Ga0209217_100002334F058883AGGAVKRQYFFAYLFVRAAKGVALLVILIGVGFCVLRYYQASIAAGAVAYQPSPHLQQALDRLKDAFLATGQIIESFNAGNQSTTPNVQGPRFPLVIDSEDDFARIGAELSRIDGERQKLKESIVSRFETLVKSIEEKLHAYAAVLQSSPTPTPATAQNLISKATPTPREEFLFSSKLGTSDANERSANLKERKEFLKVLAIRAENADNRVTLGEAADQLERLAKLLPEKFNASAAAQPDTAIASSKDPPAEQDGKVLLSERVARQLEQLRGGVRQMLLTSWTLDDTFEQVANLDSAERDKYRAALLAQKSIWLSATSRIVIGLLATGLVSLLIVVFGDLVQTQLDTATSSGTVADAINALRGSVTHYSKSEPMITAEEETPVEGGS
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