NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209217_1018666

Scaffold Ga0209217_1018666


Overview

Basic Information
Taxon OID3300027651 Open in IMG/M
Scaffold IDGa0209217_1018666 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F015514Metagenome254Y
F017541Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0209217_10186662F017541GGAGGMKLRLFQEIVELNQSFDQLIMGLERLESVPFFQRDLIQHARSDVEIARVYANREFFDSFEEIVENDAKWAYRFQRAYNEKLKDRDDIYLEVRSSEERRKRKGLPPRVVILPGWDMSDEDRFDERCASRRKNSASKMSRTIRMRSKESRPRAQGSIRLRQPKKGGGRP
Ga0209217_10186663F012046AGGAGGMKKEKPKISLPPQFVPGRQYRGLRGKVVDWVEHSFEEGLLYLHVRFTDKTELCWRVATRMTIEEGDLSDWKSGDFKQLRVFVRDERDRSV
Ga0209217_10186664F015514AGGAGMHRNVARAYDCLQNEHDRIRAACVKILAQNDRHLERELLRADLDSPRHHDEMLVYEERLSRPQRRRVLDLNRYGRKIERIMDAVLRL
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