NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209007_1000002

Scaffold Ga0209007_1000002


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)263555
Total Scaffold Genes237 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (73.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008565Metagenome / Metatranscriptome331Y
F062006Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_1000002104F062006N/AMSFVLGSIAGLTIPLGFLFILSKTVTIMPNKVCRFVFLFALLVPFDFAMNYINIWAFGYHKIGWGGALIIALPLAAYGTFLPLQPHDSNRP
Ga0209007_1000002179F008565AGGAGMKQLTFAITLLLLCISFPASLAARHKVPRYLNKESSVDMSNMNHIFLGWVDLGPDAWALYDFRSRADWAEDIAFLNAGFLQGLQATHLPGRTIVAAKDKADENIAGSDLYIKFSDVRVDYDNEHLILSIHFIDPKTNGEIASIPVRPYYGDGHNVTEYLKAALDEVGTKLQVEVTGKPPKKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.