NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209007_1000003

Scaffold Ga0209007_1000003


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000003 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)261519
Total Scaffold Genes244 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)177 (72.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000901Metagenome / Metatranscriptome844Y
F001772Metagenome / Metatranscriptome637Y
F005244Metagenome / Metatranscriptome407Y
F006150Metagenome / Metatranscriptome380Y
F042194Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_1000003145F042194AGGAGGMGSSVVVLESDPEVAQSLAGSLSSHFQSVHVTRSRDELRERVAQRRPEVVILDMEYSRLADVRHLHQDFPSVPIVCTYRVPDDELWIAAMEAGASDVCPADDVQTVLTSALRSLALAKTAVA
Ga0209007_1000003185F005244AGGAMTMSIFDEKYRVVGVENDRLLVRGVHSGEVLTIVNPELATPLSKEEYPVGKLIALTDPSTIVPLN
Ga0209007_100000320F000901GGAGMAANAAAAYGMYPQNAALSDIVHTLNKAGFDNEDICMMLSPTHPIASLVRDANLFNSERDSSAVTAGLIGWLSEFGAVMIPTVGFFIRSQAFFQAVMPSKEDTSLYGNARALVGLGFTEREAQRFENDVRHFGTLVYVSCRENAKSLWAREVLHNAGAQEAAILEESVAETLKVAAVA
Ga0209007_100000325F006150AGCAGMERSRFWRIAAAGLAFSMMVTLCALAGGEASVDELKDRVSKASVEDRPPLCIHISERQLDNANKFYAAGDVAKWQAALVDVAAFAEQARDSAIQSRKHEKPSEIAVRKMARKLADHKHAVAHDDQKQVQETIDRLERVRDDLLAAMFRNGGKS
Ga0209007_100000350F001772AGGAMRKNILLVFCGVSLVIAGYSFGSRNTTVAHASAPIPGTVPKSYGRLVTAISDQIGTGLIFEDADGVIRFVAMTGMKEGELARYDQTPTHGGIPKSYGHLVAAVANPTGTGLVFEDNQGVIRFVTITGKDEGELTRN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.