Basic Information | |
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Taxon OID | 3300027652 Open in IMG/M |
Scaffold ID | Ga0209007_1000003 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 261519 |
Total Scaffold Genes | 244 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 177 (72.54%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Algoma, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000901 | Metagenome / Metatranscriptome | 844 | Y |
F001772 | Metagenome / Metatranscriptome | 637 | Y |
F005244 | Metagenome / Metatranscriptome | 407 | Y |
F006150 | Metagenome / Metatranscriptome | 380 | Y |
F042194 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209007_1000003145 | F042194 | AGGAGG | MGSSVVVLESDPEVAQSLAGSLSSHFQSVHVTRSRDELRERVAQRRPEVVILDMEYSRLADVRHLHQDFPSVPIVCTYRVPDDELWIAAMEAGASDVCPADDVQTVLTSALRSLALAKTAVA |
Ga0209007_1000003185 | F005244 | AGGA | MTMSIFDEKYRVVGVENDRLLVRGVHSGEVLTIVNPELATPLSKEEYPVGKLIALTDPSTIVPLN |
Ga0209007_100000320 | F000901 | GGAG | MAANAAAAYGMYPQNAALSDIVHTLNKAGFDNEDICMMLSPTHPIASLVRDANLFNSERDSSAVTAGLIGWLSEFGAVMIPTVGFFIRSQAFFQAVMPSKEDTSLYGNARALVGLGFTEREAQRFENDVRHFGTLVYVSCRENAKSLWAREVLHNAGAQEAAILEESVAETLKVAAVA |
Ga0209007_100000325 | F006150 | AGCAG | MERSRFWRIAAAGLAFSMMVTLCALAGGEASVDELKDRVSKASVEDRPPLCIHISERQLDNANKFYAAGDVAKWQAALVDVAAFAEQARDSAIQSRKHEKPSEIAVRKMARKLADHKHAVAHDDQKQVQETIDRLERVRDDLLAAMFRNGGKS |
Ga0209007_100000350 | F001772 | AGGA | MRKNILLVFCGVSLVIAGYSFGSRNTTVAHASAPIPGTVPKSYGRLVTAISDQIGTGLIFEDADGVIRFVAMTGMKEGELARYDQTPTHGGIPKSYGHLVAAVANPTGTGLVFEDNQGVIRFVTITGKDEGELTRN |
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