NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209007_1000022

Scaffold Ga0209007_1000022


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122421
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (79.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001589Metagenome / Metatranscriptome667Y
F011955Metagenome / Metatranscriptome285Y
F026629Metagenome197Y
F043506Metagenome / Metatranscriptome156Y
F043510Metagenome / Metatranscriptome156Y
F071461Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_100002215F043510GGAMTEQREIRLPSDLCTAVERRFGTTFGSIDELVAFLLRELMRGNTLDLDQADQAAVEQRLKDLGYL
Ga0209007_100002226F011955GAGGMTAPMSMPRPMAQQTAPTQLVVIAEKDISEVASFIAAQSGRTRESVEAHLRWFLLENPARQPQHPLGFGLRAADQLVGCILCSPQTFRFENKNILLMGSSSFYVDDRHRGNGGRIFLQYCRLARQWPLFGTSANPEAAALWKAAGAGPMPYSDGELFAVLRWPPVVEELVHRRSSNRLLARLAGNPISQFAALVRPLQIDAFSPDALRLLTSSEQVNDLPVHHPSAKLTSLRDPSYIRWRYFSGRDATTAAFAFRSHSPDQEILVTVNQRVRGYRGQINTLNVLDIYPEVPPEEWLRIVGALVAYYQKTVDAIVLRNQNRERRELLRQRGFEYRQFDAPIGWLLDKTNLLPTKDWYPAPADGDGLI
Ga0209007_100002245F001589N/AMWKRSILVSCVACAILLSSCSPRDFLTRRLATDLIASSNTFRATQQFQLRTGVVSNKDYLSPDYLALQHHGWISGTNAPCPPALAPPPCWDITLTPAGVDTFQNLIAPGDTEKQSFNLPAARRELVAITGIAKQGSAADVEFTWHWIPLNEVGAAIYSSEVHYHTAALFRSYDDGWRLMESTIHSAQPLDEALKNAEPTQ
Ga0209007_10000226F026629N/AMPGGGWRVDRLVNSMRVLLIDPLDTADAGAWAEQRWDRIVDLGMGGKNTYERWTRQFQCPVTTLNSLRTGFDDFRRVRELLGLGCGQMIDEHGLDWWEIMSILRHGEMEALILLQRLVQTLGPGDEVYVSRPGLHASLLQYLLPRVNIFPLQWGTQKGGLRHYVRVFNKLSAPQMIDVFWDKYDLGYQFRGRLLTRKRPPSTRPVIVLPTAYINVSRTGAAYAKTFPEENFLLIATRRSGWIQDLPRNVMPAWLSSYASMRDRKNEDAERESQWRSLRSKLEEVPEFEILNRRGYLDDLSRHFRHGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLARARGLPNIACHHGALDGRYVFKRAHADVIWAKGKMEQDYLVRECGVPQERVEIGAPAMPAAWNGLEQVKHQAVRPHILFISEASDVSGGRPEEFYKDVLPPLADLALASGRELIVKLHPAESERQRAATLARILSAQQKTVTRIVTGPLTEDLLAKAWFGITILSTVAIECAVRGIPCFLCKWLEFWPYGYIEQFIRFGAGIGLNDPGEIEKIPEYLQQHPPAADVRENCWQPATAGRLREMLTSARTKSGTRECATTTQ
Ga0209007_100002264F071461GGAGMERAAEETLQQDSAFYEAVQALKVEIDSDPVVRSMVSELRAAGRSVFNSFVPRIKIRVRTEEGIFALPKPNGIRQTPAIEQVGRLAQELRNAASAVIKKSRYYNQLDNIVNEAIDSSDRFEGIAARAESAGYEVLICLDLSAYAQIQSPLQEGQAADVETEDTSPVNIRLTAGDRKFLTALRIRIDPS
Ga0209007_100002276F043506AGGVNAGRSVLPFPCAPTSAGRRALRKDLLSALRVFSGSPVVVDLSGCPTLNHEDIDLLLECIAQVAGRDTQLLVVAGTRGNRVLLEVTRISSLAPVFNSVKEALAYPQNAAEIDTEDQRANQSQAVGSA
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