NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209007_1000032

Scaffold Ga0209007_1000032


Overview

Basic Information
Taxon OID3300027652 Open in IMG/M
Scaffold IDGa0209007_1000032 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102105
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (68.60%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000279Metagenome / Metatranscriptome1383Y
F001748Metagenome / Metatranscriptome642Y
F023387Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0209007_100003229F023387GGAMNLKPAHPHTKSHHPNSAANATASRSQMAKRRSNRMALQATVGLSGEDRQKSSFTMPAKATKLNKHGAAVQLSRELLVGSVISVNNKQGIQLSARVVAQLVALDGVSTYAIEFVDQDERAETFWGIVFPPNTSNA
Ga0209007_100003258F000279GAGMTHKPEDGAVEEFILPENLLPLGSVLSEGVTPLDVSMVLAKVFRVQYAEVALLRLEGGLLKFIFPEHLRTTGAIPISSKAVAAHTALSKKAEIFNNFARVSHASIFETIKPVGEEADSPAPPSPIQKLMSVPILDQQSAVIGVIQISRKGLDPRFTQDFSREDLHDLEVAAGLLAASPVMHAN
Ga0209007_10000326F001748N/AMKNKTVSRAMLVFILLVATCAVAAPKAPTANAPQDIPAFPGTLVNARYVYVTSYDGDQFDPNVLPEDRQAIATVQNAMEKWGKFIIVYEPHQADIVLMVMSRPTEDVLAVYDAHRWPANGQYLWRMMGRSGLQASEAPLIMNLEKAFDLATTARK
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