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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027652 Open in IMG/M |
| Scaffold ID | Ga0209007_1000039 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 95414 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (72.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015895 | Metagenome / Metatranscriptome | 251 | Y |
| F044618 | Metagenome / Metatranscriptome | 154 | Y |
| F047797 | Metagenome / Metatranscriptome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209007_100003915 | F015895 | N/A | MLIAAFILVISVAALMQFSIFAWRASLLRTVSEQYVNEADSSLQPYPNLLSSSSFAEVKAVYHDLCPELEKGSTPNLRAVSAYYAVMSFLGRVGRSILPAEGFNWTQREMALCTQYATVRLSQRLERNISFVNQARSF |
| Ga0209007_100003916 | F015895 | N/A | MLIASFILVISTAALMQFAAFAWRASLLRAVSEQYVNEADDSLQPYPNLLSFSSFQEVVAVYHDLCPELHAGSASNLLPVSIYYAVMGFLNRVGASIMPAEGFSWAHREMALCTQYATVRLSQRLERNMNVVNQARSY |
| Ga0209007_100003919 | F047797 | GGA | MEILWPTLGICILVGFVFFVLAQHWQRLLRNQNFTIRRLTERVRTLEAIEDPEFRRRLHESSPSPLEQVFTFSLRLSDRFWRETLHTTAEDLSFIRAFGSFLGSVKIERWRGHTVATISEILPARQSAAWQTRSLDCYFDKSSGYDQLTLWEVPLARVRGSSERPSLELALKERSVELSAHLDPPAANNGSAKNAGLEEIIFFRVPLDSAELAEFRSHDPLPSSDNGEPADPYRDPNFWRGVYSYSDEDAGFEWQLWVRDLTKKTEWERWKILESPGNPVEQNAQKPAKATRA |
| Ga0209007_100003969 | F044618 | N/A | MTRRGSLAYYLTAWICGCFFMSLAIWTRDLFGASSNDAFSSRSVFGLIFFYFYGLVFGAIAASLGAFLLRRVMAVLKCLTASHWAAVGAILAPVLIAILGLWGKHIGTGGQGGLRVLKLITYGPMTVFEAGWWLPIPAGAATAYLLCRVQRAFAPQKSPQS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |