NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209799_1006969

Scaffold Ga0209799_1006969


Overview

Basic Information
Taxon OID3300027654 Open in IMG/M
Scaffold IDGa0209799_1006969 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2371
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000998Metagenome / Metatranscriptome810Y
F026141Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209799_10069694F000998AGGAGGMFIETYYDERATVPGSTNEPMIPYPELSGEELEVWRKYLPIRRPIRNLDSRLNREIIPGPVITEIEKARKPRLFDRVEIWSRADDPMAVGIIREKTTRYFSIARWGDAELTIEQVKKRLKTEKWMLWMSSTVGILVFLAATFVAITRGG
Ga0209799_10069695F026141N/AMTPLSKCLAQLWVLVFVEWLLLTPPGNDVTRPQKEWHKERSFDTLPQCASYRERQADEWIKRMETVPEGSTDYVTYDRTVKRFLLSKCVLAESAS
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Institute for Fundamental Biomedical Research
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