NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209388_1041258

Scaffold Ga0209388_1041258


Overview

Basic Information
Taxon OID3300027655 Open in IMG/M
Scaffold IDGa0209388_1041258 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1329
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F018903Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0209388_10412582F018903GGAVELQPPGRLLTLRAMKSILWLVPLCILVACGSDKSSQTVNRDTLTERQKDSILANSKIPNARAVGRAMNAADSMSARIRSSDTVARDTTER
Ga0209388_10412583F001175GGAGMRAVMCGVGLVVAACGPPNPCSGHQFDRLRRYSLPYAGHWVVARGDTMTFPAAPGMSDRFRLGDITLDTATRVVGRECVFRGRVVFRAPGADTLAVTWFGQPEQAIVSGWPADLGPFAGLSLAWAGRDSLSGAVLLDSKLGVQARPGMTARFVAGRSQRLSSAP
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