NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209388_1096872

Scaffold Ga0209388_1096872


Overview

Basic Information
Taxon OID3300027655 Open in IMG/M
Scaffold IDGa0209388_1096872 Open in IMG/M
Source Dataset NameVadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameEel River Critical Zone Observatory, California, USA
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002143Metagenome / Metatranscriptome590Y

Sequences

Protein IDFamilyRBSSequence
Ga0209388_10968721F002143N/AMAPTSDPNEAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNGDGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSTLAQVGLAKATVVAPAIERFEEWRTWLQCASGLSTMLLQAKVSEALDALPRGREPAPPGECFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKRPSASSSVSTSSVCPRGQNSV
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