NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1000380

Scaffold Ga0208975_1000380


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1000380 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22244
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069826Metagenome / Metatranscriptome123Y
F080859Metagenome114Y
F082232Metagenome113Y
F095361Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100038022F095361GGAGMTDQKKLIDGLVEDLLGAIHEYDDSLYMATVIGCLEFVKQQLIDEANEDEHD
Ga0208975_100038023F080859GAGGMNEEVRKVKPYPAVPDDIEPVPQSWQVIGSVLVGAALVVLMVICFAVFFTGLWIWSLLI
Ga0208975_100038028F069826AGGGGGMTTGIEYLKVEKKRRGRGPSKKPTLVNTSLRLPREVVEYFDTFPNKQVKIREVLTEYLNSQQQGANNGKI
Ga0208975_100038032F082232AGGAGMSTDNWMDDKDGVPHKNGFVRFYFIGYEESVFGYLGWHDMTDWDEGWKKVWAAAEAHPLSGDGAFQVLRHDQLQDLQRNVQYAFEEALEDKDETTWMWWHRKETAEAKAKGEMK
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