NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1000440

Scaffold Ga0208975_1000440


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1000440 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20531
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019994Metagenome / Metatranscriptome226Y
F079625Metagenome / Metatranscriptome115Y
F081032Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100044017F079625AGGGGGMKFACSRCGSRHWPDPDSSCPLCRDDREEPAEDLGDPLEAQEQAVKRFTREGCGLLSSLRWWRFIDKQTDESLHPETMAERLAWLHGEACRDAWEDMEKSPSSFAWADVCAIAGFDLCKHYRKTNQ
Ga0208975_100044023F081032N/AMRVTHTPYKTKTRAIGSDLEMTLALVGALKNPNKSAISKLGKIATTLTKLFK
Ga0208975_10004407F019994N/AMSSPVSYDLQGQNGSIVLSSAATTYTGNIRWIQVVNDAVLSTVASASGNVSGASRLQTITLPAGLGIGGNFSQVILTSGVAIVYYA
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