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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027659 Open in IMG/M |
| Scaffold ID | Ga0208975_1001536 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9702 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.26%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021732 | Metagenome / Metatranscriptome | 217 | Y |
| F031483 | Metagenome | 182 | N |
| F041648 | Metagenome / Metatranscriptome | 159 | Y |
| F052398 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208975_100153612 | F052398 | N/A | MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAIDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDIPAYWYDAAMEAGLIDYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRAAEESKKRAVIIAQKLAVWRIVLNRT |
| Ga0208975_100153614 | F021732 | N/A | MSITKYTVKCCLDKKLGHFVHVLFSSGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPNINRFNLMPLVDENELDWVIIKD |
| Ga0208975_100153615 | F041648 | N/A | MNFLTEKMDTLPNTLTDNALTRYYELRIKYLEGEKERLSNASRADYLITLDFWIYAQRIIETYVMFHKDSNHEHYLDLIKTILKNLESHNEKAEDTAINRLRLEVVTRCNSAIVKCEEITASR |
| Ga0208975_100153617 | F031483 | N/A | MNILKGKVKYTAGKVFEGQYGLSINAAITLDNGTDIRVYGKPDDEKLKALQKNDVVTIIHDGKSYKVAFDMVTANELPEKVQTSTEGNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYVDIFHQLQASGLEPAQAQPAAATIFIQIGKYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |