NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1002225

Scaffold Ga0208975_1002225


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1002225 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7761
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_100222511F099303N/AMNFLEFTYTKADGTVSKRAAIPLFGPTKFVEAIDVTSLSESDFADFCREFSAMKNDHHNQVMEKLAQFDLRHNYRKFNPENMSDVTTDYV
Ga0208975_100222512F078719AGGMEIIEIYFLFALTTGITSCYVFLSPAIALAKEHGVSNSFTESTLLSYLIYITITTITAPFSVLPIFIPSFAERFRTGLEKSVMENQI
Ga0208975_100222513F045760GGAGMASVSKSKQAYSALYKSSTRWATNRKIKLTRILKQQPNNEQIKDALANIKYRRHTPNGKTVWSHDNIRLAKLFKEFTGRASVDLFSSNPKVQSAALAYRPDWENVKVIEGKVSFSLGARAHDSKGNLVWK
Ga0208975_100222514F038245N/AKTYLNYCTIFDIIQVLKKTLTQGNTMKIYFGNANDDMFGDGLFEANDNQYYYGVEHGTGPGGLDEVRLFDGCNRYLPVHVEAIPELIAALQEIQKIQQAVKQAQEMTERAESNIEGYVYSSWNDEFEVDFDTE
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