Basic Information | |
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Taxon OID | 3300027659 Open in IMG/M |
Scaffold ID | Ga0208975_1005193 Open in IMG/M |
Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4813 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Great Lakes, Michigan, USA | |||||||
Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001731 | Metagenome | 644 | Y |
F001897 | Metagenome / Metatranscriptome | 620 | Y |
F009883 | Metagenome / Metatranscriptome | 311 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208975_100519310 | F001731 | N/A | RVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYANLELINLDQSNVLIEINNSLTIELQDSTATFVPIFGGSVVEVGIAVAEVGSVDYAQRIKIIALGALARLPKALTDGVLAHDFDGDQIYTILQQVLFGSWQEVPQALTWATYEPTEQWQDAQNTGLGEIDRPGNYELAQRSSSRTDVYSLVAALASSGLGYIGENPQGQIFYADSTHRTNYLAANGYVDLTANHALASGLSIQSRTGDVRNNITIKYGQNSTNETDASDATSIGLFGQLSQIFTTTLRHLADAEDQADFYLALRAYPEFNFNNITFELTNPELDDADRDDLINVFMGMPVNIANLPLNMVSGDFLGFVEGWTFNAAYNQVSISMILSPISFSLQAMRWNDVPITEQWNTVNPTLDWINATIVA |
Ga0208975_10051932 | F001897 | AGGCGG | MAFMDNYEGNKERTDRWLATFPKGRLEAHIIEFNADKGYVLVQAKAWRDQTETEPAGIDYAYGYLAAYPDKMKRWMVEDTCTSALMRVMALVMGGAEKATKEVMASIKTETPAADYDYWTTKHGDVPSYATSAEAEAAGTPSFGSSEDAWIPNAVPACSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV |
Ga0208975_10051933 | F009883 | GGAG | MNEISIVIFMVIAGALWAVMAYAVGFKEGQRQGYTRGRAVSRHISQLDKAAK |
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