NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1007728

Scaffold Ga0208975_1007728


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1007728 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3819
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F014728Metagenome / Metatranscriptome260Y
F057906Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10077281F014728N/AKNRKKLDLPAFWDEAQVEAKNYAKARGLGTEPSSFVVVKRRNSSVKNAWVIQNLEQWMRERHE
Ga0208975_10077288F001531GAGMDWKRIERWEYVVTAVASEYAKKFTVCEYEDIKQALYQWFAEHPNKLDTWEAIGEKDAKNLIYRSLRNEALDYCQRWKAKTVGYDVSDLYYYEPGLVEVLLPAVLMGNFHIAPKLNLSGGGKPSAPAEGGNIQVMLLEVDSAYWKLSKEDRKLLFFRHAESLDFKEIANFLSLGTEDAARMRHKRAIKRLVNKLGGYRPYHDEDLDDTKGQEEETEQHQDPE
Ga0208975_10077289F057906GGAGGMITYNLNTVDVSNLIKAHLCDDLVITNIFDYAIISSVSDKLYGMVRAYPEGKIVITKDDADKILTQAKDLESTPLFISVTSDGVFQYDLSLSKLKFENYVDHSAGIDVDVAELDVSNGTQILEWYPEFASEDDYVDALMSNGDSIGYDESETW
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