Scaffold Ga0209009_1000007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209009_1000007

Scaffold Ga0209009_1000007

Overview

Basic Information
Taxon OID	3300027667 Open in IMG/M
Scaffold ID	Ga0209009_1000007 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	133902
Total Scaffold Genes	142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	91 (64.08%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008404	Metagenome	334	Y
F009086	Metagenome	323	Y
F101756	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209009_100000712	F008404	GGAGG	MKNAMGVELSENERTLVESYQGLVRLLRGGKDLAPFERRNAMKAVAALWQVVNGLDLDPGNLYEIGI
Ga0209009_100000736	F009086	N/A	LAKNLAHTSSPDLDLPRNLGGFRARIHIPSRSGFNRFIRILGMLTLLASSLGLLAAVAGFPLNWLSMLIGLLVSLVLIGFSVRPSQRRPKF
Ga0209009_100000762	F101756	N/A	MAEHHDPNEHQHSEASDRVREVVRDSFTIALGAASWAFEQGDRLIDTWLHQGHVSREEGRRRFEEFASNTRRRGEDLSRRMRSSMPVATRDEIAKLERQVAELKSEIESLKAGNTVTQ

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