Basic Information | |
---|---|
Taxon OID | 3300027667 Open in IMG/M |
Scaffold ID | Ga0209009_1000032 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 62169 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (44.26%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007987 | Metagenome / Metatranscriptome | 341 | Y |
F023404 | Metagenome | 210 | N |
F047601 | Metagenome | 149 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209009_10000323 | F047601 | GGAG | MRRSERGKKPQHTLFMNEAQLKKLVNEAVILHRDIAAHSERLKALKADLIREARRHKEDFMITDGGGSRWTACGTDGCIARVNFPAPALLSHIDTEDETFDKIIAIAGESLDELFDSRHYLKPIADFRDEVAAALPRRTAAQLIELCQVECSPRVSFETAETKTKER |
Ga0209009_10000324 | F007987 | AGG | MKANSAKQLNRVETDSFSSTTVAALLFLAAKFPYRQFNSAELCIVSGIGRTAMSQIKNSADTPFSLGKCTLQRLDAWLAKRPGFKQQ |
Ga0209009_10000325 | F023404 | GGAGG | MARGIRKSITIPGLLTPIVKRRCAEFGQTIFTPYAVELVCYDLRSDANHTITLEIARDTQAAQDAVDRELVAHYRPGQPRKGLLVQLVERVGHLQSVAARNRHDLIFAPLSAVAERVTFPIDIWRLADPRWQKLGYASLSAYITALIRYDLLVGGPHASNTADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEEREGRPVPQEELERVKAKISQALRRISVS |
⦗Top⦘ |