Basic Information | |
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Taxon OID | 3300027667 Open in IMG/M |
Scaffold ID | Ga0209009_1000060 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 49044 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015895 | Metagenome / Metatranscriptome | 251 | Y |
F047797 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209009_100006035 | F047797 | GGA | MEILWPTLGICVLVGFVFFVLAQHWQRLLRNQNATIRRLTEKVRTLEAIDDPEFRRRLDESSPSPLEQVFTFSLRLSDRFWRETLKTTAEDLSFIRAFGSFLGSVKIERWRGHTVATISEVLPAGQSAAWQTRSLDCYFEKSSGYEKLTLWEVPIARVQNSERPPLLELALKELSIELCAHLLPPPTNNGPAKSAGLDEIVIFRVPLDSTELLEFRSQDPLQSSDNGEPSDPYRDRNFWRAFYSHSDEAAGFEWQLWIRDLAKKAEWERWKILESPGDAVEQNAQKRTKATSA |
Ga0209009_100006038 | F015895 | N/A | MLIASFILVISTAALMQFAAFAWRASLLRAVSEQYLNEAEASLQPYPNQLSFSSFQEVMAVYRDLCPELQSAPAANLRPVSIYYAAMGFLSRLGASIMPAEGFSWPHREMALCTQYATVRLSQRLERNINVANQARSY |
Ga0209009_100006039 | F015895 | N/A | MLIAAFILVISIAALTQFAMFAWRASLLRAVSEQYVNEADASLQPYPNRLRSTSFAEVKAVYRDLCPELKMSPTTNLRAVSIYYAVINLVGRVGSSILPAEGFSWTQREMALCTQYAKVRLSQRLERNISIVNQARSY |
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