NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1000361

Scaffold Ga0209482_1000361


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1000361 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40578
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086178Metagenome111N
F103911Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100036123F103911GAGGMAIFSNKIVNVYYTDENLSNVTILYNYEKDGETLVSEYHLVVDETEAQFQDLLKEMTYQDIETSTVEMHTAHRKELQNIIDEEVKRLSVNQVLQEHETVSDKHFQVIFEYDPDTHTDELFKAKMYLFTLDMVKNGSKTFRTKVRKAEDILELCKLFSAEKQRAERKKAK
Ga0209482_100036139F086178AGGMTTLAAKGYTTDGVPVYLWAKGSYIYEIEVRKDTFTDCEVFEAPYEDAVSRFEFRAINGVVVY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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