NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1000849

Scaffold Ga0209482_1000849


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1000849 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24189
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001913Metagenome / Metatranscriptome618Y
F006002Metagenome / Metatranscriptome384Y
F011526Metagenome / Metatranscriptome290Y
F084727Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100084913F011526N/AMDNREMIAVVECFIHHRTGKQIRIAKPSKPNHYLLLTKAYENCKAYFIK
Ga0209482_100084919F084727N/AMKLGNLIELITRYTGIKWVWKKMSPDCNCDERRESLNDIELW
Ga0209482_10008494F006002N/AMSRAVYCKCKNTYSIECKNNKDCDTPDYWKQGIGSIHKAEE
Ga0209482_10008497F001913N/AMIKEILDLLKNTDCKADIVQLAKGKNKFPDSFKEVFTRQKQELQWKK
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