NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1001712

Scaffold Ga0209482_1001712


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1001712 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14529
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F030556Metagenome / Metatranscriptome185Y
F063073Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100171213F063073N/AMNTTTEDKSNMHIHSLILDRKKAFAELIRAYLKYNVASAKKIEVLRNGSISINDHLYKVDISDYTGYDEGMGYIFLNPSSGRLYIQKGIVNKIYKLEVDLFDNND
Ga0209482_100171218F030556N/AMANDKTFVGKTSVITTKFGEIVKVALGPQDFEVLLNAKNEKGWVNLEIKDKRDGGKYIQLQGEYTGAKKPQAVNETDDLPF
Ga0209482_10017122F005132AGAAGMVDIIFIDDNYLYQNFPLPKRMERSALLALIQLEQFTSIQDLMGTCLYDHIEAKVEAQTLTTEEQGLFKLVKYSLAMYSAKAAISILRTATAITKAEEQKQDQYILDTISTTIDSKIGYINKRVTNYILNNAAIKAIATADGCDNDLFNEEDTYQGSVFYPQDGITVTYCEDGSVSYNP
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