Scaffold Ga0209482_1001974

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209482_1001974

Scaffold Ga0209482_1001974

Overview

Basic Information
Taxon OID	3300027668 Open in IMG/M
Scaffold ID	Ga0209482_1001974 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13229
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016210	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_100197411	F016210	N/A	MTKPIDFLKLSWLVFSLVSVGLLISYGVTSYQSRVVDKPSWMLCEADKGFKKSQYIKFHNTKKIIYNIYQQRWVADVSSMDVIKSKGKEARPTIEIHEDKARFTKTIYKKKQFLIYVSDKYYVFYKKIEDNFWSSEVSKATAQHIIIKRDDFTMLDYKNEWVKALQRNKKYTDVAIDNLFKETDGYVKSYEKILFSNGKTLKTQRSLDIFQCKEIAAVKAKI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.