NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1002042

Scaffold Ga0209482_1002042


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1002042 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12956
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (95.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007139Metagenome / Metatranscriptome357Y
F021865Metagenome / Metatranscriptome217Y
F048574Metagenome / Metatranscriptome148Y
F101913Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100204211F021865GAGGVRCKCCDNLLTEWESKARDPKEKSEFLDLCGVCRYHSNPYSYLDDDEILNKLDITVDSG
Ga0209482_100204212F007139GAGGMITTGIAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKTLEKAGVKVRTINTEDGGSYRARKFSTKYPLSFEMIKTDEGEAIGHDFGAESEVQVLWKAGQAHPQHGVATYLTAVKVTNRTEGYKSADAETSEFFA
Ga0209482_100204215F048574AGGVATNTLGTKVTYLKNDTVKLVMSMDDYRTLLQGNIDLKSAVEMMGECHTIYLEDLGTLDALEWKMAKVLGFKRKRSPSTGGDGGYYFGSYVLSNHIYAEKD
Ga0209482_100204222F101913GAGGMNLLIIILVGVGLVLVDDNPKDLPTIVEEQLICKPFDSNMCDGWRKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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