NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1004722

Scaffold Ga0209482_1004722


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1004722 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7496
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F004990Metagenome416Y
F013234Metagenome273N
F066150Metagenome127Y
F089429Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209482_100472211F066150N/AMGLKYSNNQVAICGGQMKIIHNYELKEMGEPIKETDCWLFFEKGKVAKHTIENFYFENFRKLLAFKKYQPINNTIN
Ga0209482_100472215F013234N/AMSNIKYSKAMETIILNRLMEGESIRSITKDPKMVSWATFSQKLKDNEKLQDQYYNCKKIGIEMVIAQAQDKLTESIATLENGGKMDNSLPFAHLIKEMQSNAKWLSSVLSPIRYGKDTKLTLNGGDKPISIKWEQ
Ga0209482_10047222F004990GGAMYGDPKKPCCICKKGADLNEKGKRYCADHYALHILGKSMSQIEKELKIII
Ga0209482_10047225F004629AGGAMIPTRITVDELDNMFQIATYVEKYMPSPLNMKNKRTEMFSLIDRLYGISADKDTYKGEEKPKMKIRLNGGQIQTYEFCVLLMVKGSPANRDIIGLRNFPYRRSFRELRKFFMPLSHEKVRADYYKALSDLLRVYNTKGLKFIYK
Ga0209482_10047229F089429GAGGMKAKNLDIYSIFSRTYKGKKMFPFMDFLEIGRLKKGKTIKQVSNVYQFPIKNYYNQKRRV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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