Scaffold Ga0209482_1005443

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209482_1005443

Scaffold Ga0209482_1005443

Overview

Basic Information
Taxon OID	3300027668 Open in IMG/M
Scaffold ID	Ga0209482_1005443 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6887
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056904	Metagenome / Metatranscriptome	137	N
F061979	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209482_10054433	F061979	AGAAGG	VERIFKKEQFEGMIINPFELNDSELDLHLRNGVLLEAFGKEIWVYPNKYRPFLVRYILYLYDKGSDLRRYFPDIAERKKVCAELCGLDLSNVNHKEKAEEFYVLSHKSSRLSMISFVKYQNNVIFGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLATQLASKTRQGSFPEDMATLGNVH
Ga0209482_10054438	F056904	N/A	MKNSSPYNYLAVRVDKIFSDEIKNRVIDLKIRTDLRPTHHTRIFGEVVSLPRKYRDDILPDGEVVWSSEGIEDFYKIGDKVYFHYNCVLDKAKQLEDNLFFIPARRIFLKVQCDNIIMSPGFSLGNKVYDKNVSEIELDGKKVMAEMSPITNIITDMFPKPIAKTLVVKHSSKADKLNVRCLMLDDFNIEIEVENNTYYLIEDQDIIGMYG

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