Basic Information | |
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Taxon OID | 3300027668 Open in IMG/M |
Scaffold ID | Ga0209482_1005443 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6887 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: West Antarctic Peninsula | |||||||
Coordinates | Lat. (o) | -64.8156 | Long. (o) | -64.0406 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F056904 | Metagenome / Metatranscriptome | 137 | N |
F061979 | Metagenome / Metatranscriptome | 131 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209482_10054433 | F061979 | AGAAGG | VERIFKKEQFEGMIINPFELNDSELDLHLRNGVLLEAFGKEIWVYPNKYRPFLVRYILYLYDKGSDLRRYFPDIAERKKVCAELCGLDLSNVNHKEKAEEFYVLSHKSSRLSMISFVKYQNNVIFGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLATQLASKTRQGSFPEDMATLGNVH |
Ga0209482_10054438 | F056904 | N/A | MKNSSPYNYLAVRVDKIFSDEIKNRVIDLKIRTDLRPTHHTRIFGEVVSLPRKYRDDILPDGEVVWSSEGIEDFYKIGDKVYFHYNCVLDKAKQLEDNLFFIPARRIFLKVQCDNIIMSPGFSLGNKVYDKNVSEIELDGKKVMAEMSPITNIITDMFPKPIAKTLVVKHSSKADKLNVRCLMLDDFNIEIEVENNTYYLIEDQDIIGMYG |
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