NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1025947

Scaffold Ga0209482_1025947


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1025947 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2439
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F010877Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0209482_10259472F006322N/AMGLKRNNSGNIVRGPGAELTTLQKEFLDKVAEEGLEASSRIARDLNYTSYYRDRRNNTTAFHKELMALANAEMKSIEAAKGTNLTALIKIRDLALANDDFKGAMDAIRIINDMQGYKAPVKVEQTKFDIKATIDLTAPDQDNDFLDIGYSEE
Ga0209482_10259473F010877N/AMTRKSLILGLVGSGLPKGELKAEMFAFHNSMVGKSIYFKKDENPKTACGSCIQRVKCAVWKWYHLDEKAPNYKEIVFMERLGVSNVPLYKFADGIKKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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