Basic Information | |
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Taxon OID | 3300027669 Open in IMG/M |
Scaffold ID | Ga0208981_1025557 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1507 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | El Dorado National Forest, Georgetown, California, USA | |||||||
Coordinates | Lat. (o) | 38.88 | Long. (o) | -120.64 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023724 | Metagenome / Metatranscriptome | 209 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208981_10255572 | F023724 | GAG | MKRILTTTFFAGLCLVLVAGPANTQQREEYCEALKMLLQSAKDGFTRAQTFKMAGASVCNVESETRSYGCMWSFDKSSLAAAGYQKAMQAARACFPNVTPKQSRSPRGTLHTEYDFGKGEALIDISRGRPGSEEGDWYSIDVVAP |
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