Scaffold Ga0209588_1106522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209588_1106522

Scaffold Ga0209588_1106522

Overview

Basic Information
Taxon OID	3300027671 Open in IMG/M
Scaffold ID	Ga0209588_1106522 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	901
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012151	Metagenome / Metatranscriptome	283	Y
F017571	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_11065221	F012151	N/A	WTTGDFNVVTFTHGNTEIGRIDSLSANSRFPIGGAWRLGPRFTIDRLNTVTDGSQENTYIPSLLLDYQRDRKLFQLEFGGQLGKREAFLQLQNGAFVQTQNTTRYYVSVSYRISFQ
Ga0209588_11065222	F017571	N/A	VSGKSGDKGRVVLPVAVLLALGTCAALAGDKQPQEYLDEETAATITVVGEPLVFACPRPELAANVRDYVTLAAAAVNRNGKVSYVLISYFWSTVDPRLRRDAMPSPEPLVLQADDRRIELKLRGHSAHEAGIGAPVHAPPGAAVTPNVYGTDLATLRFVAEARRLTLVADSDGIPLGYELWED

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