NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209383_1005282

Scaffold Ga0209383_1005282


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1005282 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6796
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010129Metagenome / Metatranscriptome308Y
F011890Metagenome286Y
F020448Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0209383_10052822F020448GGAMKSSNLDLHKNTISEFHNNLMVYYDLVKDKQEQNKDFDSVVNIRSLILPEMTLSEEFIEDRTILRDEENGKPRDWGTKRKWRDYMVSKGYNTENTKMYYVDHDNVDDNLLTALHTLPIKHPVFSVNIQPPGSVVPAHEDTWRIWRDKYPEEAKRHTFDNTVFFIVFLTPQEIGHSFQCGTTNIKWGPGDVIEMPYYTKHATANAGFTNKIVVQCLGIRE
Ga0209383_10052823F011890AGGAGMKNILIAFGVVMTVALLFVAVSKAETPERITIINSGKAGGSFNARTQMYREGLTAAGYDVQYENVGKISQAVKMFKASDEPTIMVYANNQVYKQDLFHTEENFIIAEYQQPLYVCRTNASKDKTSNLTVAHGKGYDPKLLTTLLGDNVTLVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYIKSGHGTCKASDVLPVMVATVIGTNIDVQKIRDIIFDITMEVQFIEYHTSRKLVRPSSTWGQELAIVQILEKGYEVK
Ga0209383_10052828F010129GAGGMANDCFYKVKVTQDNKTETYHWGYFPYSWVMKDVKQLYRNGADAVLLEMITQKQFDKRIAPYTS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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