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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027674 Open in IMG/M |
| Scaffold ID | Ga0209118_1000002 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 300154 |
| Total Scaffold Genes | 282 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 204 (72.34%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Thunder Bay, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004942 | Metagenome / Metatranscriptome | 418 | Y |
| F008970 | Metagenome / Metatranscriptome | 325 | Y |
| F013117 | Metagenome / Metatranscriptome | 274 | Y |
| F019901 | Metagenome / Metatranscriptome | 227 | Y |
| F020987 | Metagenome / Metatranscriptome | 221 | Y |
| F099783 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209118_1000002154 | F099783 | AGGAGG | VRNRYRRFNICIAFALGSALSLLAQSDRIDVQRRDDLQLKVGKASQSLLTATLVEAPVIGSASNESELPDAPSATKPDTSTADPEASPAVKRESHGAPAAAMGGPLWVDRTVADRNYLALTSGMFGASIANAELTLSCLKQHASCNDVPPSLRSRAALYGIGIPADLGVAYLTYYMKRKHSRIWYVPAACVTAANIFLGVRAFRWTQQ |
| Ga0209118_1000002260 | F004942 | N/A | MVRQMSEKAFGLGVNEVIAYAAVANVLLVLVLTAINIYYAWHAKRQADASRAQVDTSNLQKEIAAETLSILRKQIDQQRTADLATVALQLKVAIHTIEDWLKRIGSGAFPQLPDEIRILSTDFGIATQRANAIDPIVAENMGGATLYAGEAETNIRILRTGNPAKPESWKEIQDKATKNLNIAKYKLNVARTRWESMTA |
| Ga0209118_1000002263 | F020987 | AGGA | MTNNSDRSFAIIRFNERTYKSGGVMAVVKGTESGQRALNDFEWSQSQEDRSAGWRYFLEETDLQPGIDPEKATKLRQLRLDLQESQA |
| Ga0209118_100000233 | F019901 | N/A | MASSNVERGSCRFKAIQGPDGKSVIRMEMFHKTVPLLADATVDFELLNGTTLDQARKLAESVNDKVTGVLITKP |
| Ga0209118_100000235 | F008970 | AGGA | MFSQPTSPESSEENKSASANSSEGHELELLLADSWNLPLRKRLLDHLRDTFAPEKLPPLHLTSRPVDVGMLAGDILSLPWYRTVFTNLGDVISPETLPPLQLESWPVDVGELVGDQMSHMWWTSLLRSLADAAAPERLPALQLTSAPMDDPSLTAGSMQLPRWSSVISTPKVFLPDKPKAALAQVQPRVAAPLPKPDPAEVEFVHVLEADLKRDLRRSVFRQRLWVSLAVLEVLALIGTSVWWK |
| Ga0209118_100000290 | F013117 | N/A | MWRLGFLLTCVIALGTIAEAQTVTLTLLEDLSSKFPTGTAFTARDAAGKIYNGHLVTHPAQLLLRRGSMTLVFDDPVVPVTKDREGVFRAGNKMRLLKLGGSLAAAKLADDAVDGAIGATKARYVATAVSAALIIFQKGGEAKLHQGDTIDVEPRRKPLNQTDPNLTDPNLTDPNQTNPLPAPGGW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |