NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000005

Scaffold Ga0209118_1000005


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000005 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)264196
Total Scaffold Genes232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)170 (73.28%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004588Metagenome / Metatranscriptome432Y
F008095Metagenome / Metatranscriptome339Y
F011530Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_1000005172F008095AGGAGMDKSRDQDRGKGAMEQDPQNQGGNTSLQGQLGHRDEDAELKNADSDLSG
Ga0209118_100000537F004588AGGAGMKFQSISKSLLLGLALLLATSAFAAANKGSLQLSNPVTVSGKQLSAGDYSVKWDGNGPNVELNILRGNKVVATTPARLIDLSQKQNNDNAVVKNNADGTRSLAEIRFGGKKYALAIGSESASMDGSGSSK
Ga0209118_100000588F011530GAGGMENFAELMQRLLEIQSSGRQRSPELIAEDERLMDGLQKRNLAGKPTQTVKLSLDGPERA
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