NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000024

Scaffold Ga0209118_1000024


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000024 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120377
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (82.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F000465Metagenome / Metatranscriptome1105Y
F013105Metagenome / Metatranscriptome274Y
F044614Metagenome / Metatranscriptome154Y
F083090Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100002425F013105N/AMKLWGYVASCLFAVALLSQAVQGQQPPEPRKLTNNSSNAIASTPDFGAIANGVYHNTAFGFTCKIPYGWVDRTPEISEDPSPDSNARKKSILLLAVFERPPEASGDSVNSAVVVAAEAASSYPGLRNAEHYFGPLTELTKSKGLKVVNEPYDYSMGAMQLVRGDFSKPLGNLTMHQSTLVMMEKGYVVSFTFIGGSEDEVDELVEGLSFGRKETPAPHK
Ga0209118_100002434F044614N/AMPKPLILVLMIALPGAAVFAPITMAQMRAPSLTMPGAVAPSGFGRSVGISFAGRPHSHSFDRGAIFLGDPFYADYRVEPLAAPTAPPQVIIVQPATADTPPETKSEPLMIELRGNRYVRFGGRQQSAERGMSAAPDYAEAEAANSSRVAQPPAQPELSPTVLIFRDGHREQVPEYAIVGSILYASADYWQSGHWTKNIQLSALNIPATVRANHDNGVKFILPSAPNEVVVGP
Ga0209118_100002439F000465GGAGMKAVAIRKGQSLEKGADSREMGTLRCEGCGEEFFIGNDPPFVDKWLAERQAHWLEKVLAERRERDKKHPDRIELPD
Ga0209118_100002456F000192AGGAGGMAANQVVLYFDKQEDALLFTLAASSVMSAEGSVHSSDAVVKVAEEISKASRITTEGVLSS
Ga0209118_100002495F083090N/AMPDWKQIVRKNLRVLGVCSPEFTEELAAHLEDSYEAFLREGLPAEVAFQHTMGQIEGRRRVWLVMRFLQEELMTGFIRKVALPGLLTSVAAGFFYWALALDHTPPKLIWLVGGQLPLWWWCLLPICGALGALLSQRNRGSRLQRIAASLLPSWVMGTFILLMFAVGFTFSGLVNHYWSLSDRLESMGLVPPGFVIIPAAFSLLGAGIAEVSTKKSAA
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