NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000192

Scaffold Ga0209118_1000192


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000192 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40114
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008518Metagenome / Metatranscriptome332Y
F010569Metagenome / Metatranscriptome302Y
F012246Metagenome / Metatranscriptome282Y
F083009Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100019213F083009GAGGMVAEQCQHSNKVSGLVRLDYARQDAPDGPVYSGTVSVGVCEECGHIELYAKLHHLLCDWLRKT
Ga0209118_100019226F012246AGGAGMKSSSNPILSSISKSKTVLAIVLSISLVATGCSAQWISIALADLPVLTQMALNIGTIITTLQSGKQISSADAAAIQNISAQASKDLNLLETLYNEYQANPSASALQKIQSVIADINQSLPALLQAAHLGDPVLSARIAAGVNLILTTVASFAALIPQTSARPTAQKVTRQAVAIPKANDLKKQWNQQVCGPVSNSALDFSTAGCTVR
Ga0209118_10001923F010569GAGMVKATSVKAAPRAPRVKLAGTVLSLVRLENGRQTRGKLHQLSITGGLLQLETPLDEGIKVEVIFHVGESTVRSKARMLFPMWATQGYLQPFEFSDLDEEDRCNLRVDLQRLLDSSAGALVPSPAEIDETSSDANQ
Ga0209118_10001928F008518AGGMWMEKLSQGVLRVLTPLGPRYLNPSFTQRLYLLWIFRNFETLPVKVLSRRQQRCIDAMCARHGFVSVLEPNGLMDTPLLGTLEQRPPVTPPRRPNRSVSDAVAPFAADLQQRS
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