NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209118_1000202

Scaffold Ga0209118_1000202


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000202 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38632
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (87.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F000673Metagenome / Metatranscriptome944Y
F002076Metagenome / Metatranscriptome596Y
F007329Metagenome / Metatranscriptome353Y
F015234Metagenome / Metatranscriptome256Y
F066961Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100020221F007329AGGAGGMKKLSVLALALLVGTLGIPVLAHGMRQETTQDDKKPPLMNIKGTVKADGDKITFVADDGGKSWDVMNPETLKDHVGHHVELSAHVYKDKGQIHVMKVTML
Ga0209118_100020223F066961AGGAGMQTVTDSFSHVLLFACPQCGSPLASACASTKKNLEGADAHWFNPHCHCGWTGPVIGVQAVKHWVEPWKTPVKIGPDAPGSCDGEPLT
Ga0209118_100020245F000321AGTAGGVPKRRSVHFGVYNVRLLSTLDKLLRDKPRYMGELSTSINDALLAVNLNTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAKKRNCSMNQLVNSALLAYYSKAGESKLKRPTKGLGPSMHSYDTMSELERRELHQMLAELSAMQSVPLEAEEPNGTYYEYDRNLKATVKVTPDGERTPVEKLEKSFEPTRRKGPRSIAHEEITT
Ga0209118_100020247F002076AGAAGGMQKDYRPCLEKLAGAPPKRKAALIRSLLPGIEVALHSGQSLKDIWEALGNEGLQMTYHVFHMTVWRARKTRKPTATSSWGKQDKPSESQGLQEAKVETVEGRDPFANLRRLEEDRPGFRWRGTRSLETLVRGTEGTNDKNKR
Ga0209118_100020249F000673AGGAMAKPRIERSLLFPNKEFRERVRKASKDRGFRSEQAFILAACEREIRRGDDTESVTQFEARIAATLTNLAKQGQHLQTLVEAQVAITDVLLKYVITCVVEPPEDALPAARVRARLRYDKLIRAAAKELSNKN
Ga0209118_10002026F015234GGGGGMGAKFDIFKKLPDGYPLWVKAVDGLEEARAQLARLAASSPGEYFIYSVQNGCVIQARLASGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.