NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1020346

Scaffold Ga0209118_1020346


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1020346 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_10203461F006399GGAMVTAALSSTVRSLVTEYGVFWQLWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIANLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNR
Ga0209118_10203462F017965AGGALTDMSEKIGHSDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAEYLLHRSSPRPERTATGIESW
Ga0209118_10203464F004823AGGAGMYVTKAVNGVPAIQRDGQSVLSVCDQNWEFANWLCALLNELGHKSELLLNEQDWEWLNAIDTPFRRTAQHA
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